Harianto Tjong: search on Z-Library

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1

Mapping the Global Chromatin Connectivity Network for Sox2 Function in Neural Stem Cell Maintenance

Bertolini, Jessica A., Favaro, Rebecca, Zhu, Yanfen, Pagin, Miriam, Ngan, Chew Yee, Wong, Chee Hong, Tjong, Harianto, Vermunt, Marit W., Martynoga, Ben, Barone, Cristiana, Mariani, Jessica, Cardozo, M

Journal:

Year:

2019

File:

PDF, 5.23 MB

2019

2

Electrostatic effects on the folding stability of FKBP12

Batra, Jyotica, Tjong, Harianto, Zhou, Huan-Xiang

Journal:

Protein Engineering Design and Selection

Year:

2016

Language:

english

File:

PDF, 258 KB

english, 2016

3

Rational design of a conformation-switchable Ca2+- and Tb3+-binding protein without the use of multiple coupled metal-binding sites

Shunyi Li, Wei Yang, Anna W. Maniccia, Doyle Barrow Jr, Harianto Tjong, Huan-Xiang Zhou, Jenny J. Yang

Journal:

Year:

2008

Language:

english

File:

PDF, 798 KB

english, 2008

4

Prediction of Protein Solubility from Calculation of Transfer Free Energy

Tjong, Harianto, Zhou, Huan-Xiang

Journal:

Biophysical Journal

Year:

2008

Language:

english

File:

PDF, 572 KB

english, 2008

5

Chromatin interaction analyses elucidate the roles of PRC2-bound silencers in mouse development

Ngan, Chew Yee, Wong, Chee Hong, Tjong, Harianto, Wang, Wenbo, Goldfeder, Rachel L., Choi, Cindy, He, Hao, Gong, Liang, Lin, Junyan, Urban, Barbara, Chow, Julianna, Li, Meihong, Lim, Joanne, Philip, V

Journal:

Nature Genetics

Year:

2020

Language:

english

File:

PDF, 10.07 MB

english, 2020

6

Exploring the spatial and temporal organization of a cell’s proteome

Martin Beck, Maya Topf, Zachary Frazier, Harianto Tjong, Min Xu, Shihua Zhang, Frank Alber

Journal:

Journal of Structural Biology

Year:

2011

Language:

english

File:

PDF, 2.27 MB

english, 2011

7

Mining 3D genome structure populations identifies major factors governing the stability of regulatory communities

Dai, Chao, Li, Wenyuan, Tjong, Harianto, Hao, Shengli, Zhou, Yonggang, Li, Qingjiao, Chen, Lin, Zhu, Bing, Alber, Frank, Jasmine Zhou, Xianghong

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 1.80 MB

english, 2016

8

ChIA-PIPE: A fully automated pipeline for comprehensive ChIA-PET data analysis and visualization

Lee, Byoungkoo, Wang, Jiahui, Cai, Liuyang, Kim, Minji, Namburi, Sandeep, Tjong, Harianto, Feng, Yuliang, Wang, Ping, Tang, Zhonghui, Abbas, Ahmed, Wei, Chia-Lin, Ruan, Yijun, Li, Sheng

Journal:

Science Advances

Year:

2020

File:

PDF, 3.24 MB

2020

9

TopDom: an efficient and deterministic method for identifying topological domains in genomes

Shin, Hanjun, Shi, Yi, Dai, Chao, Tjong, Harianto, Gong, Ke, Alber, Frank, Zhou, Xianghong Jasmine

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 3.97 MB

english, 2015

10

Producing genome structure populations with the dynamic and automated PGS software

Hua, Nan, Tjong, Harianto, Shin, Hanjun, Gong, Ke, Zhou, Xianghong Jasmine, Alber, Frank

Journal:

Nature Protocols

Year:

2018

Language:

english

File:

PDF, 3.33 MB

english, 2018

11

Picky comprehensively detects high-resolution structural variants in nanopore long reads

Gong, Liang, Wong, Chee-Hong, Cheng, Wei-Chung, Tjong, Harianto, Menghi, Francesca, Ngan, Chew Yee, Liu, Edison T., Wei, Chia-Lin

Journal:

Year:

2018

Language:

english

File:

PDF, 1.42 MB

english, 2018

12

Computational Model to Predict Folding Stability of FKBP

Tjong, Harianto, Batra, Jyotica, Zhou, Huan-Xiang

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 35 KB

english, 2009

13

GBr 6 : A Parameterization-Free, Accurate, Analytical Generalized Born Method

Tjong, Harianto, Zhou, Huan-Xiang

Journal:

Journal of Physical Chemistry B

Year:

2007

Language:

english

File:

PDF, 70 KB

english, 2007

14

The dependence of electrostatic solvation energy on dielectric constants in Poisson-Boltzmann calculations

Tjong, Harianto, Zhou, Huang-Xiang

Journal:

The Journal of Chemical Physics

Year:

2006

Language:

english

File:

PDF, 192 KB

english, 2006

15

On the Dielectric Boundary in Poisson−Boltzmann Calculations

Tjong, Harianto, Zhou, Huan-Xiang

Journal:

Journal of Chemical Theory and Computation

Year:

2008

Language:

english

File:

PDF, 329 KB

english, 2008

16

GBr[sup 6]NL: A generalized Born method for accurately reproducing solvation energy of the nonlinear Poisson-Boltzmann equation

Tjong, Harianto, Zhou, Huan-Xiang

Journal:

The Journal of Chemical Physics

Year:

2007

Language:

english

File:

PDF, 265 KB

english, 2007

17

Inverse tuning of metal binding affinity and protein stability by altering charged coordination residues in designed calcium binding proteins

Anna Wilkins Maniccia, Wei Yang, Julian A Johnson, Shunyi Li, Harianto Tjong, Huan-Xiang Zhou, Lev A Shaket, Jenny J Yang

Journal:

Year:

2009

Language:

english

File:

PDF, 2.40 MB

english, 2009

18

The Folding Transition-State Ensemble of a Four-Helix Bundle Protein: Helix Propensity as a Determinant and Macromolecular Crowding as a Probe

Tjong, Harianto, Zhou, Huan-Xiang

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 900 KB

english, 2010

19

Population-based 3D genome structure analysis reveals driving forces in spatial genome organization

Tjong, Harianto, Li, Wenyuan, Kalhor, Reza, Dai, Chao, Hao, Shengli, Gong, Ke, Zhou, Yonggang, Li, Haochen, Zhou, Xianghong Jasmine, Le Gros, Mark A., Larabell, Carolyn A., Chen, Lin, Alber, Frank

Journal:

Proceedings of the National Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 1.77 MB

english, 2016

20

The three-dimensional genome organization of Drosophila melanogaster through data integration

Li, Qingjiao, Tjong, Harianto, Li, Xiao, Gong, Ke, Zhou, Xianghong Jasmine, Chiolo, Irene, Alber, Frank

Journal:

Year:

2017

Language:

english

File:

PDF, 5.51 MB

english, 2017

21

Genome architectures revealed by tethered chromosome conformation capture and population-based modeling

Kalhor, Reza, Tjong, Harianto, Jayathilaka, Nimanthi, Alber, Frank, Chen, Lin

Journal:

Nature Biotechnology

Year:

2011

Language:

english

File:

PDF, 2.51 MB

english, 2011

22

Accurate Calculations of Binding, Folding, and Transfer Free Energies by a Scaled Generalized Born Method

Tjong, Harianto, Zhou, Huan-Xiang

Journal:

Journal of Chemical Theory and Computation

Year:

2008

Language:

english

File:

PDF, 920 KB

english, 2008

23

Global reorganization of budding yeast chromosome conformation in different physiological conditions

Dultz, Elisa, Tjong, Harianto, Weider, Elodie, Herzog, Mareike, Young, Barry, Brune, Christiane, Müllner, Daniel, Loewen, Christopher, Alber, Frank, Weis, Karsten

Journal:

The Journal of Cell Biology

Year:

2016

Language:

english

File:

PDF, 2.27 MB

english, 2016

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